If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ), 'gf_id' => 'HOM05D000873', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000873' ), 'data_identifier' => 'HOM05D000873', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000873', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03820' => 'bna', 'A03p08020' => 'bna', 'A03p16690' => 'bna', 'A03p57920' => 'bna', 'A08p35720' => 'bna', 'A09p25780' => 'bna', 'A10p05750' => 'bna', 'Aa31LG1G6380' => 'aar', 'Aa31LG2G22080' => 'aar', 'Aa31LG2G22130' => 'aar', 'Aa31LG5G6700' => 'aar', 'Aa31LG8G17690' => 'aar', 'Aa31LG9G9370' => 'aar', 'Aa31LG9G9410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2661' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.200' => 'aag', 'Actinidia05571' => 'ach', 'Actinidia09900' => 'ach', 'Actinidia09901' => 'ach', 'Actinidia11802' => 'ach', 'Actinidia12456' => 'ach', 'Actinidia23882' => 'ach', 'Actinidia24065' => 'ach', 'Actinidia26994' => 'ach', 'Ah.01g005250' => 'amhyb', 'Ah.08g221450' => 'amhyb', 'Ah.09g235950' => 'amhyb', 'Ah.10g029450' => 'amhyb', 'Ah.14g088910' => 'amhyb', 'AL1G17330' => 'aly', 'AL3G53910' => 'aly', 'AL4G24740' => 'aly', 'AL6G48630' => 'aly', 'AL7G24380' => 'aly', 'AL7G32580' => 'aly', 'Aqoxy1G02680' => 'aox', 'Aqoxy1G02724' => 'aox', 'Aqoxy1G02727' => 'aox', 'Aqoxy1G03889' => 'aox', 'Aqoxy2G00862' => 'aox', 'Aqoxy2G01199' => 'aox', 'Aqoxy6G01667' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06CHHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45YXM3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80FISQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86CUUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZDB4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G53T1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR00DR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPP4UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDY4BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC7VPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVI3D8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2D69N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHT3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRN4PU' => 'arhy', 'AT1G07180' => 'ath', 'AT2G20800' => 'ath', 'AT2G29990' => 'ath', 'AT4G05020' => 'ath', 'AT4G21490' => 'ath', 'AT4G28220' => 'ath', 'ATR0681G171' => 'atr', 'ATR0693G094' => 'atr', 'ATR0693G126' => 'atr', 'ATR0693G339' => 'atr', 'Atru.chr10.1980' => 'acertr', 'Atru.chr10.2015' => 'acertr', 'Atru.chr3.4193' => 'acertr', 'Atru.chr6.3071' => 'acertr', 'Atru.chr6.3072' => 'acertr', 'Atru.chr6.3073' => 'acertr', 'AUR62001629' => 'cqu', 'AUR62014717' => 'cqu', 'AUR62014743' => 'cqu', 'AUR62016896' => 'cqu', 'AUR62020150' => 'cqu', 'AUR62032766' => 'cqu', 'AUR62043953' => 'cqu', 'BcaB01g01865' => 'bca', 'BcaB01g04142' => 'bca', 'BcaB01g05248' => 'bca', 'BcaB03g13402' => 'bca', 'BcaC01g06040' => 'bca', 'BcaC01g06653' => 'bca', 'BcaC03g18520' => 'bca', 'BcaC04g21366' => 'bca', 'BcaC06g32636' => 'bca', 'BcaC06g32637' => 'bca', 'BcaNung04950' => 'bca', 'BolC1t01495H' => 'bol', 'BolC2t06779H' => 'bol', 'BolC3t13424H' => 'bol', 'BolC3t14344H' => 'bol', 'BolC3t15965H' => 'bol', 'BolC5t29298H' => 'bol', 'BolC7t46081H' => 'bol', 'BolC8t47095H' => 'bol', 'BolC9t56112H' => 'bol', 'BraA01t01224Z' => 'bra', 'BraA02t05348Z' => 'bra', 'BraA03t10127Z' => 'bra', 'BraA03t10955Z' => 'bra', 'BraA03t14856Z' => 'bra', 'BraA08t35479Z' => 'bra', 'BraA09t38147Z' => 'bra', 'BraA10t42836Z' => 'bra', 'C01p15410' => 'bna', 'C02p08630' => 'bna', 'C03p09280' => 'bna', 'C03p19650' => 'bna', 'C03p36520' => 'bna', 'C05p05270' => 'bna', 'C07p56040' => 'bna', 'C08p02950' => 'bna', 'C09p32660' => 'bna', 'CAN.G1181.3' => 'can', 'CAN.G168.18' => 'can', 'CAN.G424.16' => 'can', 'CAN.G508.24' => 'can', 'CAN.G508.25' => 'can', 'CAN.G583.2' => 'can', 'CAN.G99.11' => 'can', 'CANSAT54G0814' => 'cansat', 'CANSAT56G1011' => 'cansat', 'CANSAT56G1423' => 'cansat', 'CANSAT64G2481' => 'cansat', 'CARHR006910' => 'chi', 'CARHR111470' => 'chi', 'CARHR123230' => 'chi', 'CARHR235930' => 'chi', 'CARHR252510' => 'chi', 'Carub.0001s0648' => 'cru', 'Carub.0003s3537' => 'cru', 'Carub.0004s1107' => 'cru', 'Carub.0006s3299' => 'cru', 'Carub.0007s1254' => 'cru', 'Carub.0007s1995' => 'cru', 'Ca_00251_v3' => 'car', 'Ca_05616_v3' => 'car', 'Ca_12117_v3' => 'car', 'Ca_13885_v3' => 'car', 'Ca_13886_v3' => 'car', 'Ca_14946_v3' => 'car', 'Ca_14947_v3' => 'car', 'Ca_18480_v3' => 'car', 'Ca_18496_v3' => 'car', 'Ca_29768_v3' => 'car', 'CBR_g34649' => 'cbr', 'Cc00_g20270' => 'ccan', 'Cc01_g14360' => 'ccan', 'Cc02_g12400' => 'ccan', 'Cc02_g12630' => 'ccan', 'Cc05_g06280' => 'ccan', 'Cc05_g06290' => 'ccan', 'CDE01G0009' => 'cde', 'CDE05G0177' => 'cde', 'CDE05G2097' => 'cde', 'CDE11G0475' => 'cde', 'Cfa000349' => 'cfa', 'Cfa011712' => 'cfa', 'Cfa022235' => 'cfa', 'Cfa023703' => 'cfa', 'Cfa024908' => 'cfa', 'Ciclev10014668m.g' => 'ccl', 'Ciclev10014723m.g' => 'ccl', 'Ciclev10017438m.g' => 'ccl', 'Ciclev10017486m.g' => 'ccl', 'Ciclev10028262m.g' => 'ccl', 'CiPaw.03G169900' => 'cil', 'CiPaw.04G122800' => 'cil', 'CiPaw.05G228600' => 'cil', 'CiPaw.09G157700' => 'cil', 'CiPaw.10G120100' => 'cil', 'ClCG01G022600' => 'cla', 'ClCG02G001290' => 'cla', 'ClCG02G017330' => 'cla', 'ClCG02G019490' => 'cla', 'ClCG03G005510' => 'cla', 'COL.COLO4_13685' => 'col', 'COL.COLO4_19179' => 'col', 'COL.COLO4_22203' => 'col', 'COL.COLO4_31555' => 'col', 'COL.COLO4_31587' => 'col', 'Cpa.g.sc27.104' => 'cpa', 'Cpa.g.sc27.129' => 'cpa', 'Cpa.g.sc34.91' => 'cpa', 'Cpa.g.sc34.92' => 'cpa', 'Cre05.g232200' => 'cre', 'Cre16.g691552' => 'cre', 'Cre19.g750547' => 'cre', 'CsaV3_1G011780' => 'csa', 'CsaV3_6G012430' => 'csa', 'CsaV3_6G016160' => 'csa', 'CsaV3_6G049800' => 'csa', 'CsaV3_7G004140' => 'csa', 'CSS0002662' => 'camsi', 'CSS0004034' => 'camsi', 'CSS0011946' => 'camsi', 'CSS0029454' => 'camsi', 'CSS0034801' => 'camsi', 'CSS0039530' => 'camsi', 'CSS0045641' => 'camsi', 'DCAR_004134' => 'dca', 'DCAR_008071' => 'dca', 'DCAR_012979' => 'dca', 'DCAR_018950' => 'dca', 'DCAR_019198' => 'dca', 'DCAR_028133' => 'dca', 'Dinv03099' => 'din', 'Dinv15492' => 'din', 'Dinv15493' => 'din', 'Dinv18993' => 'din', 'Dinv23712' => 'din', 'Dinv23713' => 'din', 'Dinv28654' => 'din', 'Dinv39797' => 'din', 'Dinv40476' => 'din', 'Dinv40477' => 'din', 'Duzib132G0585' => 'dzi', 'Duzib170G0532' => 'dzi', 'Duzib192G0969' => 'dzi', 'Duzib235G1438' => 'dzi', 'Duzib248G0375' => 'dzi', 'ECA234G0679' => 'eca', 'ECA234G3564' => 'eca', 'ECA246G1471' => 'eca', 'ECA248G3315' => 'eca', 'ECA248G3762' => 'eca', 'EL10Ac7g16188' => 'bvu', 'EL10Ac7g17406' => 'bvu', 'EL10Ac7g17770' => 'bvu', 'EL10Ac7g17809' => 'bvu', 'EL10Ac8g20533' => 'bvu', 'EL10Ac8g20629' => 'bvu', 'EL10Ac9g22327' => 'bvu', 'Eucgr.E02260' => 'egr', 'Eucgr.E03405' => 'egr', 'Eucgr.E03416' => 'egr', 'Eucgr.E03419' => 'egr', 'Eucgr.E03807' => 'egr', 'Eucgr.J01889' => 'egr', 'Eucgr.K00918' => 'egr', 'Eucgr.K00925' => 'egr', 'Eucgr.K00928' => 'egr', 'Eucgr.K00929' => 'egr', 'FAN02G0169' => 'fan', 'FAN05G1609' => 'fan', 'FAN05G4876' => 'fan', 'FAN11G1530' => 'fan', 'FAN11G3163' => 'fan', 'FAN11G3470' => 'fan', 'FAN14G2889' => 'fan', 'FAN14G3606' => 'fan', 'FAN16G0893' => 'fan', 'FAN16G1310' => 'fan', 'FAN21G0177' => 'fan', 'FAN21G3053' => 'fan', 'FAN25G0177' => 'fan', 'FAN25G1296' => 'fan', 'FAN25G3018' => 'fan', 'FvH4_3g03960' => 'fve', 'FvH4_3g04370' => 'fve', 'FvH4_3g38840' => 'fve', 'FvH4_6g44591' => 'fve', 'FvH4_6g44592' => 'fve', 'FvH4_6g44593' => 'fve', 'FvH4_6g44690' => 'fve', 'Glyma.02G227700' => 'gma', 'Glyma.06G298300' => 'gma', 'Glyma.07G189900' => 'gma', 'Glyma.07G191200' => 'gma', 'Glyma.08G058000' => 'gma', 'Glyma.08G059300' => 'gma', 'Glyma.11G173700' => 'gma', 'Glyma.12G106900' => 'gma', 'Glyma.12G107000' => 'gma', 'Glyma.13G246600' => 'gma', 'Glyma.13G300900' => 'gma', 'Glyma.14G194600' => 'gma', 'Glyma.15G067300' => 'gma', 'Glyma.18G061700' => 'gma', 'Gohir.A04G105800' => 'ghi', 'Gohir.A06G123600' => 'ghi', 'Gohir.A06G123700' => 'ghi', 'Gohir.A07G104500' => 'ghi', 'Gohir.A09G089500' => 'ghi', 'Gohir.A10G021100' => 'ghi', 'Gohir.D04G145600' => 'ghi', 'Gohir.D06G128400' => 'ghi', 'Gohir.D06G128500' => 'ghi', 'Gohir.D06G183666' => 'ghi', 'Gohir.D07G108500' => 'ghi', 'Gohir.D09G089600' => 'ghi', 'Gohir.D10G021900' => 'ghi', 'Gorai.001G116600' => 'gra', 'Gorai.006G105800' => 'gra', 'Gorai.010G150000' => 'gra', 'Gorai.010G150100' => 'gra', 'Gorai.010G214800' => 'gra', 'Gorai.011G023000' => 'gra', 'Gorai.012G131700' => 'gra', 'GSVIVG01005840001' => 'vvi', 'GSVIVG01006114001' => 'vvi', 'GSVIVG01006508001' => 'vvi', 'GSVIVG01020362001' => 'vvi', 'GSVIVG01024722001' => 'vvi', 'GSVIVG01030007001' => 'vvi', 'GSVIVG01030008001' => 'vvi', 'HanXRQChr01g0005061' => 'han', 'HanXRQChr01g0005071' => 'han', 'HanXRQChr01g0010741' => 'han', 'HanXRQChr06g0171011' => 'han', 'HanXRQChr08g0214031' => 'han', 'HanXRQChr11g0337511' => 'han', 'HanXRQChr12g0375501' => 'han', 'HanXRQChr13g0401391' => 'han', 'HanXRQChr13g0420111' => 'han', 'HanXRQChr16g0517761' => 'han', 'HanXRQChr17g0542181' => 'han', 'HanXRQChr17g0542191' => 'han', 'Haze_06552' => 'cav', 'Haze_06579' => 'cav', 'Haze_13089' => 'cav', 'Haze_24343' => 'cav', 'Haze_24347' => 'cav', 'Haze_24349' => 'cav', 'Hma1.2p1_0144F.1_g064950' => 'hma', 'Hma1.2p1_0146F.1_g065665' => 'hma', 'Hma1.2p1_0565F.1_g179530' => 'hma', 'Hma1.2p1_0662F.1_g198240' => 'hma', 'HPP92_004168' => 'vpl', 'HPP92_007583' => 'vpl', 'HPP92_016554' => 'vpl', 'HPP92_017631' => 'vpl', 'Hund01232' => 'sun', 'Hund01234' => 'sun', 'Hund01499' => 'sun', 'Hund08048' => 'sun', 'Hund20989' => 'sun', 'Hund21277' => 'sun', 'Hund23604' => 'sun', 'Hund23637' => 'sun', 'Hund30128' => 'sun', 'Hund31068' => 'sun', 'Lalb_Chr01g0005441' => 'lal', 'Lalb_Chr03g0029151' => 'lal', 'Lalb_Chr03g0029161' => 'lal', 'Lalb_Chr03g0029171' => 'lal', 'Lalb_Chr05g0218211' => 'lal', 'Lalb_Chr05g0218221' => 'lal', 'Lalb_Chr09g0327331' => 'lal', 'Lalb_Chr15g0082971' => 'lal', 'Lalb_Chr17g0345141' => 'lal', 'Lalb_Chr18g0059941' => 'lal', 'Lj1A1211T73' => 'lonja', 'Lj1A1213T39' => 'lonja', 'Lj1A135T18' => 'lonja', 'Lj1C132T4' => 'lonja', 'Lj1C735T10' => 'lonja', 'Lj2A1215G59' => 'lonja', 'Lj2A279T58' => 'lonja', 'Lj3g0011092' => 'lja', 'Lj4g0017989' => 'lja', 'Lj4g0025422' => 'lja', 'Lj6g0002526' => 'lja', 'Lj6g0015860' => 'lja', 'Lj7A95G18' => 'lonja', 'Lj7C95T1' => 'lonja', 'Lj7C99T15' => 'lonja', 'Lj8A117G57' => 'lonja', 'LjContig00155g0012956' => 'lja', 'Lsat_1_v5_gn_1_126860' => 'lsa', 'Lsat_1_v5_gn_3_39940' => 'lsa', 'Lsat_1_v5_gn_3_39960' => 'lsa', 'Lsat_1_v5_gn_4_56141' => 'lsa', 'Lsat_1_v5_gn_4_56901' => 'lsa', 'Lsat_1_v5_gn_5_172941' => 'lsa', 'Manes.02G118500' => 'mes', 'Manes.13G151400' => 'mes', 'Manes.13G151500' => 'mes', 'Manes.16G022300' => 'mes', 'Manes.16G038900' => 'mes', 'Manes.17G039000' => 'mes', 'Mapoly0016s0087' => 'mpo', 'Mapoly0035s0102' => 'mpo', 'Mapoly0038s0104' => 'mpo', 'MBI02_g06004_MAGBIO' => 'mbi', 'MBI02_g06005_MAGBIO' => 'mbi', 'MBI02_g10547_MAGBIO' => 'mbi', 'MBI02_g27222_MAGBIO' => 'mbi', 'MBI02_g38999_MAGBIO' => 'mbi', 'MBI02_g39345_MAGBIO' => 'mbi', 'MBI02_g39346_MAGBIO' => 'mbi', 'MBI02_g41641_MAGBIO' => 'mbi', 'MBI02_g41642_MAGBIO' => 'mbi', 'MBI02_g47876_MAGBIO' => 'mbi', 'MBI03_g24260_MAGBIO' => 'mbi', 'MBI03_g24261_MAGBIO' => 'mbi', 'MBI18_g25256_MAGBIO' => 'mbi', 'MBI18_g25257_MAGBIO' => 'mbi', 'MCO16G386' => 'mco', 'MD02G1063600' => 'mdo', 'MD03G1067100' => 'mdo', 'MD05G1323500' => 'mdo', 'MD05G1325700' => 'mdo', 'MD09G1094600' => 'mdo', 'MD09G1096300' => 'mdo', 'MD10G1301300' => 'mdo', 'MD10G1303600' => 'mdo', 'MD11G1072000' => 'mdo', 'MD14G1065500' => 'mdo', 'MD14G1065600' => 'mdo', 'MD17G1084300' => 'mdo', 'Medtr2g011730' => 'mtr', 'Medtr3g464380' => 'mtr', 'Medtr4g045993' => 'mtr', 'Medtr4g045997' => 'mtr', 'Medtr4g090580' => 'mtr', 'Medtr4g091240' => 'mtr', 'Medtr5g071250' => 'mtr', 'MELO3C002555.2' => 'cme', 'MELO3C007315.2' => 'cme', 'MELO3C013534.2' => 'cme', 'MELO3C018763.2' => 'cme', 'MELO3C025843.2' => 'cme', 'Migut.H01516' => 'egut', 'Migut.M00332' => 'egut', 'Migut.M00333' => 'egut', 'Migut.M01194' => 'egut', 'Migut.N02462' => 'egut', 'MSTRG.14677' => 'ama', 'MSTRG.17686' => 'ama', 'MSTRG.6522' => 'ama', 'MSTRG.7292' => 'ama', 'MSTRG.7293' => 'ama', 'MSTRG.7301' => 'ama', 'Nitab4.5_0000102g0040' => 'nta', 'Nitab4.5_0000190g0080' => 'nta', 'Nitab4.5_0000330g0010' => 'nta', 'Nitab4.5_0000635g0210' => 'nta', 'Nitab4.5_0000635g0220' => 'nta', 'Nitab4.5_0001170g0160' => 'nta', 'Nitab4.5_0001871g0050' => 'nta', 'Nitab4.5_0001871g0060' => 'nta', 'Nitab4.5_0002370g0060' => 'nta', 'Nitab4.5_0003195g0020' => 'nta', 'Nitab4.5_0003195g0030' => 'nta', 'Nitab4.5_0003676g0050' => 'nta', 'Nitab4.5_0005248g0010' => 'nta', 'Nitab4.5_0006651g0030' => 'nta', 'Nitab4.5_0006742g0010' => 'nta', 'Nitab4.5_0008145g0020' => 'nta', 'Nn1g03942' => 'nnu', 'Nn1g06704' => 'nnu', 'Nn1g06766' => 'nnu', 'Nn1g06769' => 'nnu', 'Nn2g10870' => 'nnu', 'Oeu021140.1' => 'oeu', 'Oeu025482.2' => 'oeu', 'Oeu029199.1' => 'oeu', 'Oeu031203.1' => 'oeu', 'Oeu036683.1' => 'oeu', 'Oeu038221.1' => 'oeu', 'Oeu045318.1' => 'oeu', 'Oeu046186.2' => 'oeu', 'Oeu049732.1' => 'oeu', 'Oeu057664.1' => 'oeu', 'Os01g0830100' => 'osa', 'Os05g0331200' => 'osa', 'Os06g0684000' => 'osa', 'Os07g0564500' => 'osa', 'Os08g0141400' => 'osa', 'Peaxi162Scf00007g02725' => 'pax', 'Peaxi162Scf00007g02727' => 'pax', 'Peaxi162Scf00527g00215' => 'pax', 'Peaxi162Scf00608g00210' => 'pax', 'Peaxi162Scf00608g00319' => 'pax', 'Peaxi162Scf00619g00911' => 'pax', 'Peaxi162Scf00659g00036' => 'pax', 'Peaxi162Scf01200g00027' => 'pax', 'PGR042G2491' => 'pgr', 'PGR119G0086' => 'pgr', 'PGR142G1671' => 'pgr', 'PGR142G3707' => 'pgr', 'PGSC0003DMG400004168' => 'stu', 'PGSC0003DMG400018325' => 'stu', 'PGSC0003DMG400021670' => 'stu', 'PGSC0003DMG400022368' => 'stu', 'PGSC0003DMG400022405' => 'stu', 'Phvul.002G175300' => 'pvu', 'Phvul.002G221500' => 'pvu', 'Phvul.002G223400' => 'pvu', 'Phvul.006G192400' => 'pvu', 'Phvul.008G260300' => 'pvu', 'Phvul.011G111200' => 'pvu', 'Phvul.011G111300' => 'pvu', 'Potri.004G034100' => 'ptr', 'Potri.004G036300' => 'ptr', 'Potri.009G047100' => 'ptr', 'Potri.011G042500' => 'ptr', 'Potri.011G044600' => 'ptr', 'Potri.013G147200' => 'ptr', 'Potri.013G147300' => 'ptr', 'Potri.013G147400' => 'ptr', 'Pp3c10_11280' => 'ppa', 'Pp3c10_3800' => 'ppa', 'Pp3c14_12290' => 'ppa', 'Pp3c17_19710' => 'ppa', 'Pp3c1_33500' => 'ppa', 'Pp3c23_3430' => 'ppa', 'PRCOL_00003446' => 'pco', 'PRCOL_00005000' => 'pco', 'Prupe.3G132100' => 'ppe', 'Prupe.3G231300' => 'ppe', 'Prupe.3G231400' => 'ppe', 'Prupe.4G037100' => 'ppe', 'Prupe.4G039000' => 'ppe', 'Prupe.6G055600' => 'ppe', 'Psat0s2366g0080' => 'psa', 'Psat1g208880' => 'psa', 'Psat2g057520' => 'psa', 'Psat5g157880' => 'psa', 'Psat7g109280' => 'psa', 'Psat7g110040' => 'psa', 'Psat7g153880' => 'psa', 'PSO210G5935' => 'pso', 'PSO339G2966' => 'pso', 'PSO541G3823' => 'pso', 'PSO675G2723' => 'pso', 'PSO675G3385' => 'pso', 'PSO801G0124' => 'pso', 'PSO832G1653' => 'pso', 'QL01p038656' => 'qlo', 'QL04p018222' => 'qlo', 'QL05p038597' => 'qlo', 'QL07p038733' => 'qlo', 'QL07p038984' => 'qlo', 'QL08p037322' => 'qlo', 'QL12p023897' => 'qlo', 'RcHm_v2.0_Chr1g0349501' => 'rch', 'RcHm_v2.0_Chr2g0134111' => 'rch', 'RcHm_v2.0_Chr2g0161871' => 'rch', 'RcHm_v2.0_Chr2g0161881' => 'rch', 'RcHm_v2.0_Chr2g0171021' => 'rch', 'RcHm_v2.0_Chr4g0402101' => 'rch', 'RcHm_v2.0_Chr5g0006291' => 'rch', 'RcHm_v2.0_Chr5g0006761' => 'rch', 'RcHm_v2.0_Chr5g0070091' => 'rch', 'RcHm_v2.0_Chr7g0215551' => 'rch', 'RcHm_v2.0_Chr7g0223151' => 'rch', 'RcHm_v2.0_Chr7g0225061' => 'rch', 'Rhsim01G0237200' => 'rsi', 'Rhsim02G0120400' => 'rsi', 'Rhsim06G0152000' => 'rsi', 'Rhsim13G0169800' => 'rsi', 'Sabra04G0019800' => 'sbr', 'Sabra09G0034500' => 'sbr', 'Sabra11G0029200' => 'sbr', 'Sabra13G0119000' => 'sbr', 'SalBow1G3449' => 'sbo', 'SalBow1G4496' => 'sbo', 'SalBow3G3426' => 'sbo', 'SalBow7G1296' => 'sbo', 'SalBow7G3073' => 'sbo', 'SalBow7G3266' => 'sbo', 'SalBow7G3273' => 'sbo', 'SalBow7G3727' => 'sbo', 'SalBow8G2916' => 'sbo', 'Sc06g0008460' => 'sci', 'Sc06g0009170' => 'sci', 'Sc17g0006470' => 'sci', 'Sc17g0006640' => 'sci', 'Sc21g0002470' => 'sci', 'Sed0009475' => 'sed', 'Sed0015030' => 'sed', 'Sed0015772' => 'sed', 'Sed0023335' => 'sed', 'Sed0024323' => 'sed', 'Sed0024362' => 'sed', 'Sed0024515' => 'sed', 'SEGI_07042' => 'sgi', 'SEGI_07654' => 'sgi', 'SEGI_09080' => 'sgi', 'SEGI_10214' => 'sgi', 'SEGI_11461' => 'sgi', 'SEGI_11486' => 'sgi', 'SEGI_12190' => 'sgi', 'SEGI_13804' => 'sgi', 'SEGI_19540' => 'sgi', 'SEGI_25800' => 'sgi', 'SEGI_27205' => 'sgi', 'SEGI_37861' => 'sgi', 'SGA_v2.0_scaffold159G37627' => 'sas', 'SGA_v2.0_scaffold159G37688' => 'sas', 'SGA_v2.0_scaffold177G39472' => 'sas', 'SGA_v2.0_scaffold49G18278' => 'sas', 'SGA_v2.0_scaffold70G23464' => 'sas', 'SGA_v2.0_scaffold7G03967' => 'sas', 'SHI10476' => 'shi', 'SMO115G0241' => 'smo', 'SMO169G0087' => 'smo', 'Solyc02g078900.3' => 'sly', 'Solyc02g079170.3' => 'sly', 'Solyc06g007160.4' => 'sly', 'Solyc07g054640.1' => 'sly', 'Solyc07g054670.4' => 'sly', 'Solyc10g008630.3' => 'sly', 'Sopen02g023710' => 'spe', 'Sopen02g023970' => 'spe', 'Sopen06g002130' => 'spe', 'Sopen07g028540' => 'spe', 'Sopen07g028570' => 'spe', 'Sopen10g004430' => 'spe', 'Sp1g05950' => 'spa', 'Sp4g12550' => 'spa', 'Sp6g03920' => 'spa', 'Sp6g27250' => 'spa', 'Sp7g19610' => 'spa', 'Sp7g26180' => 'spa', 'TAR369G0623' => 'tar', 'TAR624G1069' => 'tar', 'TAR626G0424' => 'tar', 'TAR627G0173' => 'tar', 'TAR627G0287' => 'tar', 'TAR629G3479' => 'tar', 'THA.LOC104800742' => 'tha', 'THA.LOC104812710' => 'tha', 'THA.LOC104812953' => 'tha', 'THA.LOC104814496' => 'tha', 'Thecc.02G171800' => 'tca', 'Thecc.02G172000' => 'tca', 'Thecc.06G196300' => 'tca', 'Thecc.06G199800' => 'tca', 'Thecc.09G299500' => 'tca', 'Thhalv10001939m.g' => 'esa', 'Thhalv10007398m.g' => 'esa', 'Thhalv10016537m.g' => 'esa', 'Thhalv10024771m.g' => 'esa', 'Thhalv10024784m.g' => 'esa', 'TPR.G15177' => 'tpr', 'TPR.G21172' => 'tpr', 'TPR.G21658' => 'tpr', 'TPR.G25715' => 'tpr', 'TPR.G31808' => 'tpr', 'TPR.G32435' => 'tpr', 'TPR.G34573' => 'tpr', 'TPR.G36739' => 'tpr', 'TPR.G40292' => 'tpr', 'TPR.G523' => 'tpr', 'TWI18G1374' => 'twi', 'TWI36G1389' => 'twi', 'TWI38G0545' => 'twi', 'TWI38G1526' => 'twi', 'TWI63G0906' => 'twi', 'TWI79G1405' => 'twi', 'unitig_21.g20000' => 'ugi', 'unitig_26.g9372' => 'ugi', 'unitig_27.g25030' => 'ugi', 'unitig_27.g25031' => 'ugi', 'unitig_52.g17340' => 'ugi', 'unitig_62.g23189' => 'ugi', 'unitig_899.g15264' => 'ugi', 'vmacro03808' => 'vma', 'vmacro12261' => 'vma', 'vmacro12262' => 'vma', 'vmacro14600' => 'vma', 'vmacro15875' => 'vma', 'VMungo0251G0252' => 'vmu', 'VMungo0251G2993' => 'vmu', 'VMungo0251G3628' => 'vmu', 'VMungo0540G1328' => 'vmu', 'VMungo0540G1717' => 'vmu', 'VMungo0647G1808' => 'vmu', 'VMungo1127G0153' => 'vmu', 'VMungo1127G1990' => 'vmu', 'Zm00001eb151430' => 'zma', 'Zm00001eb172970' => 'zma', 'Zm00001eb273590' => 'zma', 'Zm00001eb324410' => 'zma', 'Zm00001eb368430' => 'zma', 'Zm00001eb369830' => 'zma' ) $gf_id = 'HOM05D000873' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000873' ) $data_identifier = 'HOM05D000873' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 15, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 10, 'lal' => (int) 10, 'lonja' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb369830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1